exportNarrowPeaks

exportNarrowPeaks

Usage

exportNarrowPeaks(p, file)

Arguments

p

A GRanges, as produced by `callPeaks`

file

The path to the file where to save

Value

Invisible file path.

Examples

# call some peaks:
bam <- system.file("extdata", "ex1.bam", package="Rsamtools")
peaks <- callPeaks(bam, paired=TRUE)
#> Reading signal and identifying candidate regions...
#> Identified 2 candidate regions
#> Computing significance...
#> (In the absence of a control, FDR is unlikely to be calibrated)
#> Reporting 2 regions, 2 with FDR<0.05
# save them:
filepath <- tempfile(fileext="narrowPeak")
exportNarrowPeaks(peaks, filepath)