addAssayToESE

Adds an assay of signal matrices to an existing `EnrichmentSE` object.

Usage

addAssayToESE(x, a, name = "normalized", replace = TRUE)

Arguments

x

An object of class `EnrichmentSE`, as produced by signal2Matrix.

a

The assay to add, e.g. a list of normalizedMatrix objects

name

The assay name under which to add `a`.

replace

Logical, whether to replace any existing assay of the same name (default TRUE). If FALSE and the assay already existed, the new assay name is given a suffix.

Value

`x` with the added/updated assay.

Examples

# we first get an EnrichmentSE object:
data(exampleESE)
# then we will create a new assay which is simply sqrt-transformed, and add 
# it back in the object
newAssay <- lapply(getSignalMatrices(exampleESE), sqrt)
exampleESE <- addAssayToESE(exampleESE, newAssay, name="sqrt")