Skip to contents

EnrichmentSE class and constructor

Source: R/ESE.R
EnrichmentSE-class.Rd

The `EnrichmentSE` class is a container for epigenomic enrichment data, extending the RangedSummarizedExperiment class.

Usage

EnrichmentSE(assays, rowRanges = NULL, ...)

# S4 method for class 'EnrichmentSE,ANY,ANY,ANY'
x[i, j, ..., drop = TRUE]

# S4 method for class 'EnrichmentSE'
show(object)

# S4 method for class 'EnrichmentSE'
score(x, ...)

Arguments

assays

A list of matrices or `normalizedMatrix` objects.

rowRanges

A GRanges object.

...

Arguments passed to getSignalMatrices.

x

An object of class `EnrichmentSE`, as produced by signal2Matrix.

i, j

Indices for subsetting.

drop

Logical; whether to drop dimensions.

object

An `EnrichmentSE` object.

Value

An `EnrichmentSE` object.

Functions

  • x[i: Subset method for EnrichmentSE

  • show(EnrichmentSE): Show method for EnrichmentSE

  • score(EnrichmentSE): Access the score (first assay)